species:   Fugra
pid:       PID0975
parent:    FgmilR-7dps-53
paralog:   
locus:     NC_026476.1:213943-214084
matures:   ['UGAGGAUACUAUGAUUCUGGGCA', 'CUCAGAUAUCGAAUAGGAUACAUAUUUUGCGAA']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026476.1:213943-214084

0 out of bounds
4 alignments
4 proper strand
2 stranded perfect matches

*************************                                                                                  ***************************        
GGUGACGGUGAGGAUACUAUGAUUCUGGGCAGUCUUCAGACCCGUAUACUUGGGAAGGUCUAAUGAAAGGACAGAAGAGGCCUUGAAAAUGGCCAUGGCCAAGCUCAGAUAUCGAAUAGGAUACAUAUUUUGCGAAAUUAUC
.((((.((((.(....((((((((((((((..(((((...((((......))))...((((.......)))).)))))((((.((........)).))))..))))))).)))..))))....).)))))))).........
--------UGAGGAUACUAUGAUUCUGGGCA--------------------------------------------------------------------------------------------------------------- l=23 a=0 c
-------------------------------------------------------------------------------------------------------CUCAGAUAUCGAAUAGGAUACAUAUUUUGCGAA------ l=33 a=0 c*
--------------UACUAUGAUUCUGGGCAGUCUU---------------------------------------------------------------------------------------------------------- l=22 a=2 ma
-------------------------------------------------------------------------------------------------------CUCAGAUAUCGAAUAGGAUACAUAUUUUGCGAA------ l=33 a=0 ma*

--UGACGGUGAGGAUACUAUGAUUCa-------------------------------------------------------------------------------------------------------------------- l=24 a=2 
--------------UACUAUGAUUCUGGGCAGUCUU---------------------------------------------------------------------------------------------------------- l=22 a=2 (ma)

mb-00011
ax-1001011
ku-01
ss-111111101100
fn-011
